Student Wiki on methodology

This Wiki is intended to collectively make the point on methodologies employed in research papers we analyze during the course. "Writers" are students who wish to contribute to a specific subject. Before contributing, please add your name in the "Writers group choice". When initiating a contribution, please indicate your name in brackets.


PLEASE:  DO NOT change the INDEX page !!!
This page contains the links to the nine official subjects, which are the same in the Choice.

To contribute, go to the correct page by clicking on the description here in the index, then click EDIT and contribute. At the end, please save.

 IMPORTANT !!!

Please do not make extensive cut-and-paste: it s useless, anybody can go to the source you use and read it.  Read the texts, digest, and make a short résumé. If you wih you can include link(s) to the source(s).

Other contributors can revise, add, erase, modify...   Please do not repeat the same text as well. 


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Index

NGS-genome sequencing

FISH techniques

Epigenomics: ChIP-Seq, DNase-Seq, FAIRE, ATAC-Seq, Nucleosome positioning

Transcription Factor mapping and prediction

Transcriptome: special techniques, RNA-Seq, GRO-Seq, CAGE, others.

Long-range interaction and chromatin loops: from 3C to Hi-C

RNA binding protein mapping: RIP, CLIP, HITS-CLIP, PAR-CLIP

Knocking-down and knocking-out genes

Genome editing